[hdf-forum] Error when exiting program using hdf5 1.6.8

Michael Jackson mike.jackson at bluequartz.net
Fri Jun 5 14:14:44 EDT 2009


I am getting either one of the following errors when my program exits:

Assertion failed: (head->list_mem==0), function H5FL_blk_gc_list,  
file /Users/mjackson/Workspace/hdf5-168/src/H5FL.c, line 1064.
Abort trap

HDF5: infinite loop closing library
        
D,G,A,S,T,F,FD,P,D,F,FD,P,FD,P,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL
Abort trap


This is with hdf5 V16.8 on OS X 10.5.7 Intel (Mac Pro).

I googled a bit for the errors but nothing really jumped out at me.  
Has anyone seen this type of error before?

In the same project I have lots of other programs all using the same  
HDF5 library and I am not getting the error. Just kinda popped up  
today. I rebuilt the hdf5 library and reinstalled but I am still  
getting the errors. I have ensured that I am closing all the hdf5  
files that are opened. I have tried several different hdf5 files and  
all will give the error.

Any help or nudges in the right direction would be appreciated.

Thanks
_________________________________________________________
Mike Jackson                  mike.jackson at bluequartz.net
BlueQuartz Software                    www.bluequartz.net
Principal Software Engineer                  Dayton, Ohio




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