[hdf-forum] Error when exiting program using hdf5 1.6.8

[Mike Jackson]

Seems the problem followed me to another Mac when I came home do
definitely something wrong. Almost seems like I am stomping on some
memory somewhere. I'll try some other platforms and see what happens.
Unfortunately all I have at home this weekend is Windows XP via
Bootcamp but at least it would give me a sanity check. Just seems odd
that after almost a year of development I start hitting this bug now.
I guess more frustrating than anything else.

Thanks for the input.
Mike

On Sat, Jun 6, 2009 at 6:55 AM, Dimitris Servis<servisster at gmail.com> wrote:
> I have seen such messages being due to an overrun unrelated to the library
> itself. You can also get it when killing the process abruptly. Memory
> checking is a good starting point.
>
> HTH
>
> -- dimitris
>
> 2009/6/5 Michael Jackson <mike.jackson at bluequartz.net>
>>
>> I am getting either one of the following errors when my program exits:
>>
>> Assertion failed: (head->list_mem==0), function H5FL_blk_gc_list, file
>> /Users/mjackson/Workspace/hdf5-168/src/H5FL.c, line 1064.
>> Abort trap
>>
>> HDF5: infinite loop closing library
>>
>>  D,G,A,S,T,F,FD,P,D,F,FD,P,FD,P,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL,FL
>> Abort trap
>>
>>
>> This is with hdf5 V16.8 on OS X 10.5.7 Intel (Mac Pro).
>>
>> I googled a bit for the errors but nothing really jumped out at me. Has
>> anyone seen this type of error before?
>>
>> In the same project I have lots of other programs all using the same HDF5
>> library and I am not getting the error. Just kinda popped up today. I
>> rebuilt the hdf5 library and reinstalled but I am still getting the errors.
>> I have ensured that I am closing all the hdf5 files that are opened. I have
>> tried several different hdf5 files and all will give the error.
>>
>> Any help or nudges in the right direction would be appreciated.
>>
>> Thanks
>> _________________________________________________________
>> Mike Jackson                  mike.jackson at bluequartz.net

----------------------------------------------------------------------
This mailing list is for HDF software users discussion.
To subscribe to this list, send a message to hdf-forum-subscribe at hdfgroup.org.
To unsubscribe, send a message to hdf-forum-unsubscribe at hdfgroup.org.